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Editing: ExtraTreeClassifier.php

<?php

namespace Rubix\ML\Classifiers;

use Rubix\ML\Learner;
use Rubix\ML\DataType;
use Rubix\ML\Estimator;
use Rubix\ML\Persistable;
use Rubix\ML\Probabilistic;
use Rubix\ML\RanksFeatures;
use Rubix\ML\EstimatorType;
use Rubix\ML\Helpers\Params;
use Rubix\ML\Datasets\Dataset;
use Rubix\ML\Datasets\Labeled;
use Rubix\ML\Graph\Nodes\Best;
use Rubix\ML\Graph\Trees\ExtraTree;
use Rubix\ML\Traits\AutotrackRevisions;
use Rubix\ML\Specifications\DatasetIsLabeled;
use Rubix\ML\Specifications\DatasetIsNotEmpty;
use Rubix\ML\Specifications\SpecificationChain;
use Rubix\ML\Specifications\DatasetHasDimensionality;
use Rubix\ML\Specifications\LabelsAreCompatibleWithLearner;
use Rubix\ML\Specifications\SamplesAreCompatibleWithEstimator;
use Rubix\ML\Exceptions\RuntimeException;

use function Rubix\ML\argmax;
use function count;
use function array_fill;
use function array_combine;
use function array_replace;
use function array_count_values;
use function array_map;

/**
 * Extra Tree Classifier
 *
 * An Extremely Randomized Classification Tree that recursively chooses node splits
 * with the least entropy among a set of *k* (given by max features) completely
 * random split points. Extra Trees are useful in ensembles such as Random Forest or
 * AdaBoost as the *weak* learner or they can be used on their own. The strength of
 * Extra Trees as compared to more greedy decision trees are their computational
 * efficiency and reduced bias.
 *
 * References:
 * [1] P. Geurts et al. (2005). Extremely Randomized Trees.
 *
 * @category    Machine Learning
 * @package     Rubix/ML
 * @author      Andrew DalPino
 */
class ExtraTreeClassifier extends ExtraTree implements Estimator, Learner, Probabilistic, RanksFeatures, Persistable
{
    use AutotrackRevisions;

/**
     * The list of possible class outcomes.
     *
     * @var string[]
     */
    protected array $classes = [
        //
    ];

/**
     * @param int $maxHeight
     * @param int $maxLeafSize
     * @param float $minPurityIncrease
     * @param int|null $maxFeatures
     */
    public function __construct(
        int $maxHeight = PHP_INT_MAX,
        int $maxLeafSize = 3,
        float $minPurityIncrease = 1e-7,
        ?int $maxFeatures = null
    ) {
        parent::__construct($maxHeight, $maxLeafSize, $minPurityIncrease, $maxFeatures);
    }

/**
     * Return the estimator type.
     *
     * @internal
     *
     * @return EstimatorType
     */
    public function type() : EstimatorType
    {
        return EstimatorType::classifier();
    }

/**
     * Return the data types that the estimator is compatible with.
     *
     * @internal
     *
     * @return list<DataType>
     */
    public function compatibility() : array
    {
        return [
            DataType::categorical(),
            DataType::continuous(),
        ];
    }

/**
     * Return the settings of the hyper-parameters in an associative array.
     *
     * @internal
     *
     * @return mixed[]
     */
    public function params() : array
    {
        return [
            'max height' => $this->maxHeight,
            'max leaf size' => $this->maxLeafSize,
            'max features' => $this->maxFeatures,
            'min purity increase' => $this->minPurityIncrease,
        ];
    }

/**
     * Has the learner been trained?
     *
     * @return bool
     */
    public function trained() : bool
    {
        return !$this->bare();
    }

/**
     * Train the learner with a dataset.
     *
     * @param Labeled $dataset
     */
    public function train(Dataset $dataset) : void
    {
        SpecificationChain::with([
            new DatasetIsLabeled($dataset),
            new DatasetIsNotEmpty($dataset),
            new SamplesAreCompatibleWithEstimator($dataset, $this),
            new LabelsAreCompatibleWithLearner($dataset, $this),
        ])->check();

$this->classes = $dataset->possibleOutcomes();

$this->grow($dataset);
    }

/**
     * Make predictions from a dataset.
     *
     * @param Dataset $dataset
     * @throws RuntimeException
     * @return list<string>
     */
    public function predict(Dataset $dataset) : array
    {
        if ($this->bare() or !$this->featureCount) {
            throw new RuntimeException('Estimator has not been trained.');
        }

DatasetHasDimensionality::with($dataset, $this->featureCount)->check();

return array_map([$this, 'predictSample'], $dataset->samples());
    }

/**
     * Predict a single sample and return the result.
     *
     * @internal
     *
     * @param list<string|int|float> $sample
     * @return string
     */
    public function predictSample(array $sample) : string
    {
        /** @var Best $node */
        $node = $this->search($sample);

return $node->outcome();
    }

/**
     * Estimate the joint probabilities for each possible outcome.
     *
     * @param Dataset $dataset
     * @throws RuntimeException
     * @return list<array<string,float>>
     */
    public function proba(Dataset $dataset) : array
    {
        if ($this->bare() or !isset($this->classes, $this->featureCount)) {
            throw new RuntimeException('Estimator has not been trained.');
        }

DatasetHasDimensionality::with($dataset, $this->featureCount)->check();

$template = array_combine($this->classes, array_fill(0, count($this->classes), 0.0)) ?: [];

$probabilities = [];

foreach ($dataset->samples() as $sample) {
            /** @var Best $node */
            $node = $this->search($sample);

$probabilities[] = array_replace($template, $node->probabilities());
        }

return $probabilities;
    }

/**
     * Terminate the branch by selecting the class outcome with the highest probability.
     *
     * @param Labeled $dataset
     * @return Best
     */
    protected function terminate(Labeled $dataset) : Best
    {
        $n = $dataset->numSamples();

$counts = array_count_values($dataset->labels());

/** @var string $outcome */
        $outcome = argmax($counts);

$probabilities = [];

foreach ($counts as $class => $count) {
            $probabilities[$class] = $count / $n;
        }

$p = $counts[$outcome] / $n;

$entropy = -($p * log($p));

return new Best($outcome, $probabilities, $entropy, $n);
    }

/**
     * Calculate the impurity of a set of labels.
     *
     * @param list<string|int> $labels
     * @return float
     */
    protected function impurity(array $labels) : float
    {
        $n = count($labels);

if ($n <= 1) {
            return 0.0;
        }

$counts = array_count_values($labels);

$entropy = 0.0;

foreach ($counts as $count) {
            $p = $count / $n;

$entropy -= $p * log($p);
        }

return $entropy;
    }

/**
     * Return the string representation of the object.
     *
     * @internal
     *
     * @return string
     */
    public function __toString() : string
    {
        return 'Extra Tree Classifier (' . Params::stringify($this->params()) . ')';
    }
}

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